All functions

appendToBody()

Append values to function body

bapply()

Boolean apply

barcodePattern

Single-sell barcode pattern

basenameSansExt()

Base name without the file extension

callAndName()

Call a function and give the result names

compress() decompress()

Compress or decompress a file

dots()

Extract dots from function

extPattern compressExtPattern

File extension pattern matching

fileDepth()

File depth

fileExt()

File extension

forceDetach()

Force detach packages

formalsList

Shared list of optional default formals

genomeMetadataNames

Slot names in metadata containing genome information

getNameInParent()

Get the name of a variable defined in the parent frame

headtail()

Return the first and last parts of an object

initDir()

Initialize directory

lanePattern

Sequencing lane grep pattern

majorVersion()

Major version

matchArgsToDoCall()

Match arguments to do.call

metadataBlacklist

Sample metadata blacklist

methodFunction() methodFormals()

Access the data inside an S4 method definition

metricsCols

Quality control metric columns

minorVersion()

Minor version

params

Shared parameter documentation

pasteURL()

Concatenate strings to form a URL

printString()

Print string

realpath()

Express file paths in canonical form

requireNamespaces()

Require package namespaces

safeDeparse()

Expression deparsing

sanitizeVersion()

Sanitize version

shell()

Invoke a command in the system command-line shell

shorten()

Shorten (truncate) input to a specified width

showSlotInfo()

Show slot information

standardizeCall()

Standardize call

toNames()

Sanitize vector input to names

updateMessage

Update message